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Competitive Model on Denaturant-Mediated Protein Unfolding

Published in Biophysical Society
2003
PMID: 12547761
Volume: 84
   
Issue: 2 I
Pages: 770 - 774
Abstract
A denaturant-mediated protein unfolding model, which is different from already existing ones based on the assumption that denaturant competes for water molecules to interact and thus reduces water-protein interactions, which leads to unfolding phenomenon, has been developed with a detailed mathematical justification. Theoretical results suggested that the parameter (mu) obtained from the usual linear extrapolation model must be a linear function of the number of bound water molecules (n) on protein with a zero intercept. However, application of this theory to a set of proteins for which mu values for urea denaturation are already known showed that mu was a linear function of n but with a nonzero intercept. Finally this nonzero intercept was attributed to binding of denaturant to protein at n = 0. Detailed investigation of this factor showed that average equilibrium constant for binding of urea with aromatic side chains (generally nonpolar side chains) was kb ≈ 0.65 ± 0.45 mol-1, which agreed well with earlier experimental estimations, and also suggested that an integrated approach was necessary to avoid discrepancy in ΔGH2O estimated from different models.
About the journal
JournalBiophysical Journal
PublisherBiophysical Society
ISSN0006-3495
Open AccessNo