Header menu link for other important links
X
An extended loop in CE7 carbohydrate esterase family is dispensable for oligomerization but required for activity and thermostability
Singh, M.K.,
Published in Academic Press Inc.
2016
PMID: 27085421
Volume: 194
   
Issue: 3
Pages: 434 - 445
Abstract
The carbohydrate esterase family 7 (CE7) belonging to the α/β hydrolase superfamily contains a structurally conserved loop extension element relative to the canonical α/β hydrolase fold. This element called the β-interface loop contributes 20-30% of the total buried surface area at intersubunit interfaces of the functional hexameric state. To test whether this loop is an enabling region for the structure and function of the oligomeric assembly, we designed a truncation variant of the thermostable CE7 acetyl esterase from Thermotoga maritima (TmAcE). Although deletion of 26 out of 40 residues in the loop had little impact on the hexamer formation, the variant exhibited altered dynamics of the oligomeric assembly and a loss of thermal stability. Furthermore, the mutant lacked catalytic activity. Crystal structures of the variant and a new crystal form of the wild type protein determined at 2.75 Å and 1.76 Å, respectively, provide a rationale for the properties of the variant. The hexameric assembly in the variant is identical to that of the wild type and differed only in the lack of buried surface area interactions at the original intersubunit interfaces. This is accompanied by disorder in an extended region of the truncated loop that consequently induces disorder in the neighboring oxyanion hole loop. Overall, the results suggest that the β-interface loop in CE7 enzymes is dispensable for the oligomeric assembly. Rather, the loop extension event was evolutionarily selected to regulate activity, conformational flexibility and thermal stability. © 2016 Elsevier Inc.
About the journal
JournalJournal of Structural Biology
PublisherAcademic Press Inc.
ISSN10478477
Open AccessNo
Concepts (36)
  •  related image
    CARBOHYDRATE ESTERASE FAMILY 7
  •  related image
    ESTERASE
  •  related image
    Unclassified drug
  •  related image
    Bacterial protein
  •  related image
    Carbohydrate
  •  related image
    ESTERASE
  •  related image
    Article
  •  related image
    Catalysis
  •  related image
    Controlled study
  •  related image
    Crystal structure
  •  related image
    Enzyme activity
  •  related image
    Enzyme analysis
  •  related image
    Enzyme conformation
  •  related image
    Enzyme stability
  •  related image
    Enzyme structure
  •  related image
    Nonhuman
  •  related image
    Oligomerization
  •  related image
    Priority journal
  •  related image
    Protein assembly
  •  related image
    Surface area
  •  related image
    THERMOTOGA MARITIMA
  •  related image
    Chemistry
  •  related image
    Enzymology
  •  related image
    Gene deletion
  •  related image
    Metabolism
  •  related image
    Protein conformation
  •  related image
    Protein stability
  •  related image
    Site directed mutagenesis
  •  related image
    X ray crystallography
  •  related image
    Bacterial proteins
  •  related image
    Carbohydrates
  •  related image
    Crystallography, x-ray
  •  related image
    ESTERASES
  •  related image
    Mutagenesis, site-directed
  •  related image
    Sequence deletion
  •  related image
    THERMOTOGA MARITIMA