Pectic transeliminases, also known as pectic lyases or pectinases, are involved in the degradation of pectic substances. They have a wide range of applications in food and textile processing. Although Aspergillus and Penicillium spp. produce pectin lyases, bacteria are the major producers of polygalacturonate lyase. The yields of pectic transeliminases are less than other pectinases. Since new applications for pectic transeliminases are emerging, an improved process for the production of these enzymes is necessary. © Springer 2005.

Sathyanarayana Naidu Gummadi

Department Of Biotechnology

Dinesh J.R.S.S. Kumar

Bacteria

Biodegradation

Food processing

Textile processing

Aspergillus

PECTIC TRANSELIMINASES

PECTINASES

PENICILLIUM SPP.

Enzymes

PENICILLIUM

IIT Madras is a public technical and research university located in Chennai, Tamil Nadu. Founded in 1959, it is recognised as an Institute of National Importance.

IIT Madras has been ranked as the top engineering institute in India for four years in a row by the National Institutional Ranking Framework of the MHRD

It currently offers undergraduate, postgraduate and research degrees across 16 disciplines in Engineering, Sciences, Humanities and Management. About 596 faculty belonging to science and engineering departments and centres of the Institute are engaged in teaching, research and industrial consultancy.

IIT Madras

Biotechnology Letters

This paper reports the interaction of salt (NaCl and KCl), initial pH, and temperature and their effects on the specific growth rate and lag phase of food spoiling halotolerant yeast, Debaryomyces nepalensis. The optimization of salt, initial pH, and temperature was carried out using response surface methodology based on central composite design. The mathematical model showed that salt has a significant effect on specific growth rate and lag phase of D. nepalensis. The optimal conditions of salt concentration, pH, and temperature of growth were found to be 0.3 M NaCl, 7.1, 26 °C and 0.6 M KCl, 5.6, 25°C, respectively. Under these conditions, a maximum specific growth rate of 0.41 and 0.5 h -1 was observed in medium containing NaCl and KCl, respectively. Lag phase can be increased most effectively either by increasing salt concentrations or both by decreasing (≤20°C) or increasing the temperature (≥40°C) with moderate (1.5 M) or low salt concentration (0.5 M), respectively. Results show that D. nepalensis need to generate weak acids to maintain the intracellular pH under pH and saline stress conditions. The results obtained in this study will be helpful in using optimal conditions for the maximum growth of the strain for the production of certain metabolites like organic acids and glycerol and designing food preservation procedures. © 2009 Springer Science + Business Media, LLC.

Food and Bioprocess Technology

Use of Response Surface Methodology to Study the Combined Effect of Salt, pH, and Temperature on the Growth of Food-Spoiling Halotolerant Yeast, Debaryomyces nepalensis NCYC 3413

The effect of various parameters such as pH, agitation and aeration was studied for maximum production of pectin lyase (PL) and pectate lyase (PGL) by a novel yeast strain Debaryomyces nepalensis in bioreactor. The optimal levels of pH, aeration and agitation rate was found to be 7.0, 300 rpm and 1 vvm, respectively. Under these conditions, D. nepalensis produced 14,200 U/L of PL and 12,000 U/L of PGL corresponding to a productivity of 600 U/L h and 500 U/L h of PL and PGL, respectively. Fed-batch production was studied by feeding inducer (lemon peel), carbon source (galactose) individually and in combination at 12 h of growth for enhanced production of PL and PGL. Combined feeding of inducer and carbon source at 12 h was found to be the best strategy for enhanced production of PL and PGL. Under these conditions, production of PL and PGL increased to 23,300 U/L and 22,400 U/L, respectively which corresponded to a productivity of 728 U/L h of PL and 700 U/L h of PGL, respectively. The production was increased by 1.6- and 1.8-fold and productivity by 1.2- and 1.4-fold for PL and PGL, respectively when compared to batch culture. © 2007 Elsevier Ltd. All rights reserved.

Bioresource Technology

Batch and fed batch production of pectin lyase and pectate lyase by novel strain Debaryomyces nepalensis in bioreactor

In this study, Debaryomyces nepalensis NCYC 3413 isolated from rotten apple was studied for its halotolerance and its growth was compared with that of Saccharomyces cerevisiae in high salt medium. The specific growth rate of D. nepalensis was not affected by KCl even up to a concentration of 1 M, whereas NaCl and LiCl affected the growth of D. nepalensis. Among all tested salts, LiCl showed maximum inhibition on growth. At all conditions, halotolerance of D. nepalensis was much higher than that of S. cerevisiae. D. nepalensis showed maximum viability (80-100%) when grown in KCl, which was higher than with NaCl and LiCl. Pectinase production by D. nepalensis was noted at all high salt concentrations, namely, 2 M NaCl, 2 M KCl, and 0.5 M LiCl, and the maximum specific activity was observed when the strain was grown in 2 M NaCl. © 2007 Springer Science+Business Media, LLC.

Current Microbiology

Effect of salts on growth and pectinase production by halotolerant yeast, Debaryomyces nepalensis NCYC 3413

Pectin and other pectic substances are complex polysaccharides, which contribute firmness and structure to plant tissues as a part of the middle lamella. The basic unit in pectic substances is galacturonan (α-D-galacturonic acid). Pectic substances are classified into two types; homogalacturonan and heterogalacturonan (rhamnogalacturonan). In homogalacturonan, the main polymer chain consists of α-D-galacturonate units linked by (1 → 4) glycosidic bonds, whereas in rhamnogalacturonan, the primary chain consist of (1→4) linked α-D-glacturonates and with about 24% L-rhamnose units that are β(1→2) and β(1→4) linked to D-galacturonate units (Whitaker, 1991). The side chains of rhamnogalacturonans usually consist of L-arabinose or D-galacturonic acid units. In plant tissues, about 6070% of the galacturonate units are esterified with methanol and occasionally with ethanol. Based on the degree of esterification, pectic substances are classified into protopectin, pectinic acid, pectin and polygalacturonic acid (Table 1). Molecular size, degree of esterification and weight distribution of polygalacturonic acid residues are important factors that contribute to heterogeneity in pectic substances. Relative molecular masses of pectic substances isolated from various sources such as citrus fruits, apple and plums, range from 25 to 350 kDa. Pectinases are a complex and diverse group of enzymes involved in the degradation of pectic substances. The diversity of forms of pectic substances in plant cells probably accounts for the existence of various forms of these enzymes. Pectinases are classified depending on their substrate and mode of enzymatic reaction (Fig. 1). Pectinases act as carbon recycling agents in nature by degrading pectic substances to saturated and unsaturated galacturonans, which are further catabolized (Table represented) to 5-keto-4-deoxy-uronate and finally to pyruvate and 3-phosphoglyceraldehyde (Vincent-Sealy et al., 1999). Pectinases from phytopathogenic fungi such as Aspergillus flavus, Fusarium oxysporum and Botrytis cinerea are also known to play a vital role in plant pathogenicity or virulence by degrading pectic compounds present in cell wall (Lang and Drenberg, 2000; DiPietro and Roncero, 1996; Ten Have et al., 1998). Pectinases, especially polygalacturonase, is known to play a major role in pectin breakdown during the final stages of fruit ripening (Sozzi- Quiroga and Fraschina, 1997; Chin et al., 1999). Polymethylgalacturonase (PMG), polygalacturonase (PG), pectin lyase (PL), polygalacturonate lyase (PGL) and pectinesterase (PME) are industrially important pectinases discussed in this chapter. © 2007 Springer.

Industrial Enzymes: Structure, Function and Applications

Structural and biochemical properties of pectinases

Debaryomyces nepalensis was previously isolated, which is capable of producing pectin lyase and pectate lyase using pectin as sole source of carbon. The parameters affecting the activity of these enzymes are categorized into two, viz., chemical (amount of substrate and enzyme) and physical (pH of reaction mixture and temperature of incubation). The effect of these parameters on pectin lyase and pectate lyase was studied using central composite design. The optimal conditions of amount of substrate and enzyme (culture broth) were found to be 545 μl (∼1 g/l pectin) and 123 μl for pectin lyase and 707 μl (∼1.1 g/l polygalacturonic acid) and 96 μl for pectate lyase. The optimum pH and temperature for reaction was found to be 6.4 and 35 °C for pectin lyase and 7.5 and 32 °C for pectate lyase. After optimization, the activity of pectin lyase and pectate lyase was increased by 1.3- and 1.4-fold, respectively. © 2006 Elsevier B.V. All rights reserved.

Biochemical Engineering Journal

Optimization of chemical and physical parameters affecting the activity of pectin lyase and pectate lyase from Debaryomyces nepalensis: A statistical approach

Pectinases are a complex group of enzymes that degrade various pectic substances present in plant tissues. Pectinases have potential applications in fruit, paper and textile industries. Apart from these industrial applications, these enzymes possess biological importance in protoplast fusion technology and plant pathology. Since applications of pectinases in various fields are widening, it is important to understand the nature and properties of these enzymes for efficient and effective usage. For the past few years, vigorous research has been carried out on isolation and characterization of pectinases. New affinity matrices with improved characteristics and affinity-precipitation techniques have been developed for purification of pectinases. Recently much attention has been focused on chemical modification of pectinases and their catalytic performance by various researchers. These studies are helpful in determining key amino acid residues responsible for substrate binding, catalytic action, and physico-chemical environmental conditions for maximum hydrolysis. This short review highlights progress on purification and understanding the biochemical aspects of microbial pectinases. © 2002 Elsevier Science Ltd. All rights reserved.

Process Biochemistry

Purification and biochemical properties of microbial pectinases - A review

The effect of microbiological parameters, Viz., slant age, inoculum age and amount of inoculum were studied using response surface methodology for the production of pectolytic enzymes, polymethylgalacturonase, polygalacturonase and pectinlyase. The central composite design was used to determine the individual optimum values. Individual optimum values of slant age, inoculum age and amount of inoculum were 49.5 h, 52.3 h and 11.2%, respectively, for polymethylgalacturonase; 62.4 h, 60.5 h and 14.4%, respectively, for polygalacturonase, and 78.3 h, 52.5 h and 1314%, respectively, for pectinlyase. In order to develop a two-stage inoculum possessing the best conditions for the maximum production of all three enzymes, a multiresponse analysis was carried out using a generalized distance approach. The microbiological parameters were optimized simultaneously for maximum production of enzymes. The simultaneous optimal values of slant age, inoculum age and amount of inoculum were 81.4 h, 66.7 h and 15.8%, respectively, for all the three enzymes. After optimization, the fermentation time was reduced from 144 to 120 h.

Multiresponse analysis of microbiological parameters affecting the production of pectolytic enzymes by Aspergillus niger: A statistical view

Pectolytic enzymes play an important role in food processing industries and alcoholic beverage industries. These enzymes degrade pectin and reduce the viscosity of the solution so that it can be handled easily. These enzymes are mainly synthesized by plants and microorganisms. Aspergillus niger is used for industrial production of pectolytic enzymes. This fungus produces polygalacturonase, polymethylgalacturonase and pectinlyase. This review mainly concerns with the production of pectolytic enzymes using different carbon sources. It also deals with the effect of operating parameters such as temperature, aeration rate, agitation and type of fermentation on the production of these enzymes.

Bioprocess Engineering

Production of pectolytic enzymes - A review

The synthesis of pectinase is investigated using six species of Aspergillus, with five media differing either in their carbon sources or level of carbon source(s). Five of the six species used, synthesized appreciable amounts of pectinase in the media containing sugars. Pectinase synthesis was highest for A. niger, NCIM 548, with all the sugar containing media. A. foetidus, NCIM 510, was the only one among the organisms studied, that responded well to the medium containing pectin in the absence of additional sugars supplied in the medium. © 1995 Springer-Verlag.

Journal	Data powered by TypesetBiotechnology Letters
Publisher	Data powered by TypesetSpringer Netherlands
ISSN	01415492
Open Access	No