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Lineage relationship of CD8+ T cell subsets is revealed by progressive changes in the epigenetic landscape
, G. Crompton Joseph, Cuddapah Suresh, Roychoudhuri Rahul, Ji Yun, Yang Wenjing, J. Patel Shashank, Sukumar Madhusudhanan, C. Palmer Douglas, Peng WeiqunShow More
Published in Springer Science and Business Media LLC
2016
Volume: 13
   
Issue: 4
Pages: 502 - 513
Abstract

To better elucidate epigenetic mechanisms that correlate with the dynamic gene expression program observed upon T-cell differentiation, we investigated the genomic landscape of histone modifications in naive and memory CD8+ T cells. Using a ChIP-Seq approach coupled with global gene expression profiling, we generated genome-wide histone H3 lysine 4 (H3K4me3) and H3 lysine 27 (H3K27me3) trimethylation maps in naive, T memory stem cells, central memory cells, and effector memory cells in order to gain insight into how histone architecture is remodeled during T cell differentiation. We show that H3K4me3 histone modifications are associated with activation of genes, while H3K27me3 is negatively correlated with gene expression at canonical loci and enhancers associated with T-cell metabolism, effector function, and memory. Our results also reveal histone modifications and gene expression signatures that distinguish the recently identified T memory stem cells from other CD8+ T-cell subsets. Taken together, our results suggest that CD8+ lymphocytes undergo chromatin remodeling in a progressive fashion. These findings have major implications for our understanding of peripheral T-cell ontogeny and the formation of immunological memory.

About the journal
JournalData powered by TypesetCellular & Molecular Immunology
PublisherData powered by TypesetSpringer Science and Business Media LLC
Open AccessNo